I think you're confusing programming and coding—view source on a website shows you its markup, nothing to do with programming.
Bearing that in mind, your questions depend on whether you're using a pre-made CMS… If so then you're probably best off recoding the front-end from scratch.
If you're getting a programmer to write a CMS from the ground up (which I suspect you're not) then he could work his stuff around what's already there. Make sense?


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